News highlights

News from the transPLANT project and partners. See also the transPLANT newsletter.

Registration now closed!

Workshop on plant variation data, re-sequencing projects and GWAS analyses within transPLANT, hosted at The European Bioinformatics Institute, Cambridge, UK from 1st July to 3rd July. Click here to apply.

The Grid Computing and Clusters group of Barcelona Supercomputing Center is proud to announce the release of COMPSs version 1.2. A framework for easily implement distributed applications.

This thesis focuses on deriving function from sequence information, with the emphasis on plant sequence data.

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Relevant publications

Recent methodological developments in plant phenotyping, as well as the growing importance of its applications in plant science and breeding, are resulting in a fast accumulation of multidimensional data.

The information that connects genotypes and phenotypes is essentially embedded in research articles written in natural language.

With the number of sequenced plant genomes growing, the number of predicted genes and functional annotations is also increasing. The association between genes and phenotypic traits is currently of great interest.

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Get results from ten different plant genomics databases in a single click.
Try a sample search...

variation archive

Store, accession and update plant variation data. Now accepting submissions.

Training resources

A collection of training resources from transPLANT related events. Browse the materials.

Search for genomic resources for plant species of agricultural and scientific importance. Try a sample search...

transPLANT

is a European-Union funded e-infrstructure to support computational analysis of genomic data from crop and model plants. The project funds coordination and research activities; and provides free access to tools, training and data standards.

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Training

transPLANT is running a series of training courses across Europe. The next one will be held at EMBL-EBI, Hinton, UK, 1st-3rd July, 2015. When registration is opened, details will be posted here.

  • You can access material from the previous transPLANT training courses here.
  • We are developing a series of videos, guiding users through some of the most interesting and complex data sets available for plants. View the first video, focused on resources for the barley genome, here.

Standards

The development and adoption of data standards is vital to the interoperability of data. transPLANT is currently pursuing the development of standards for plant phenotyping data, in collaboration with other interested groups. Visit our Phenotype standardisation portal to see the latest proposals and get involved.