Service

IPK WebBlast

This BLAST-service offer accessing to the Hordeum vulgare physical map and genomic sequence data that where released in The international Barley Sequencing Consortium.

MoTo DB

The Metabolome Tomato Database (MoTo DB, Moco et al 2006 http://www.ncbi.nlm.nih.gov/pubmed/16896233) is a metabolite database dedicated to LC-MS based metabolomics of tomato (Solanum lycopersicum). The database contains information such as retention times and accurate masses and is currently being expanded towards additional plant species.

Genetic and Genomic Information System

GnpIS is a powerful multispecies centralized database information system dedicated to plant, trees and their bioagressors (fungi). It is composed of a set of relational databases, each optimized according to one data domain and connected together to be search as a whole or by theme. Its originality is to bridge genetic and genomic data, allowing researchers and breeders to cross genetic information (i.e Genetic maps, QTL, markers, SNPs, Germplasms, Genotypes) with genomic data (i.e. physical maps, genome annotation, expression data) for species of agronomical interest.

PRI-CAT

PRI-CAT (Muino et al 2011; http://www.ncbi.nlm.nih.gov/pubmed/21609962 ) is a user-friendly web-tool for the analysis of plant ChIP-seq experiements. Starting with the raw sequences, the user will obtain the DNA binding maps in a wiggle file format, as well as, the potential target genes of the studied transcription factor. A DAS server was implemented for storage of the resulting DNA binding maps. At the moment, more than 30 binding maps are avaliable.

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