GnpIS is a powerful multispecies centralized database information system dedicated to plant, trees and their bioagressors (fungi). It is composed of a set of relational databases, each optimized according to one data domain and connected together to be search as a whole or by theme. Its originality is to bridge genetic and genomic data, allowing researchers and breeders to cross genetic information (i.e Genetic maps, QTL, markers, SNPs, Germplasms, Genotypes) with genomic data (i.e. physical maps, genome annotation, expression data) for species of agronomical interest.

PRI-CAT (Muino et al 2011; http://www.ncbi.nlm.nih.gov/pubmed/21609962 ) is a user-friendly web-tool for the analysis of plant ChIP-seq experiements. Starting with the raw sequences, the user will obtain the DNA binding maps in a wiggle file format, as well as, the potential target genes of the studied transcription factor. A DAS server was implemented for storage of the resulting DNA binding maps. At the moment, more than 30 binding maps are avaliable.

Brief description: BMRF (Bayesian Markov Random Fields for protein function prediction; Kourmpetis et al 2011, http://www.ncbi.nlm.nih.gov/pubmed/21098674) is a method for protein function prediction that integrates information from sequences, protein-protein interactions, and gene expression. The database contains predicted functions for thousands of Arabidopsis protein with so far uncharacterized function.